diff --git a/packages/bruno-app/src/providers/ReduxStore/slices/collections/actions.js b/packages/bruno-app/src/providers/ReduxStore/slices/collections/actions.js
index da3d74091..3f6dc3c92 100644
--- a/packages/bruno-app/src/providers/ReduxStore/slices/collections/actions.js
+++ b/packages/bruno-app/src/providers/ReduxStore/slices/collections/actions.js
@@ -672,26 +672,6 @@ export const runCollectionFolder
         })
       );
 
-      // to only include those requests in the specified order while preserving folder data
-      if (selectedRequestUids && selectedRequestUids.length > 0) {
-        const newItems = [];
-
-        selectedRequestUids.forEach((uid, index) => {
-          const requestItem = findItemInCollection(collectionCopy, uid);
-          if (requestItem) {
-            const clonedRequest = cloneDeep(requestItem);
-            clonedRequest.seq = index + 1;
-            newItems.push(clonedRequest);
-          }
-        });
-
-        if (folder) {
-          folder.items = newItems;
-        } else {
-          collectionCopy.items = newItems;
-        }
-      }
-
       const { ipcRenderer } = window;
       ipcRenderer
         .invoke(
@@ -702,7 +682,8 @@ export const runCollectionFolder
           collectionCopy.runtimeVariables,
           recursive,
           delay,
-          tags
+          tags,
+          selectedRequestUids
         )
         .then(resolve)
         .catch((err) => {
diff --git a/packages/bruno-electron/src/ipc/network/index.js b/packages/bruno-electron/src/ipc/network/index.js
index 72309aa95..d8a58bc72 100644
--- a/packages/bruno-electron/src/ipc/network/index.js
+++ b/packages/bruno-electron/src/ipc/network/index.js
@@ -1057,8 +1057,7 @@ const registerNetworkIpc = (mainWindow) => {
   ipcMain.handle('fetch-gql-schema', fetchGqlSchemaHandler);
 
   ipcMain.handle(
-    'renderer:run-collection-folder',
-    async (event, folder, collection, environment, runtimeVariables, recursive, delay, tags) => {
+    'renderer:run-collection-folder', async (event, folder, collection, environment, runtimeVariables, recursive, delay, tags, selectedRequestUids) => {
       const collectionUid = collection.uid;
       const collectionPath = collection.pathname;
       const folderUid = folder ? folder.uid : null;
@@ -1135,6 +1134,22 @@ const registerNetworkIpc = (mainWindow) => {
           });
         }
 
+        // Filter requests based on selectedRequestUids (for "Configure requests to run")
+        if (selectedRequestUids && selectedRequestUids.length > 0) {
+          const uidIndexMap = new Map();
+          selectedRequestUids.forEach((uid, index) => {
+            uidIndexMap.set(uid, index);
+          });
+
+          folderRequests = folderRequests
+            .filter((request) => uidIndexMap.has(request.uid))
+            .sort((a, b) => {
+              const indexA = uidIndexMap.get(a.uid);
+              const indexB = uidIndexMap.get(b.uid);
+              return indexA - indexB;
+            });
+        }
+
         let currentRequestIndex = 0;
         let nJumps = 0; // count the number of jumps to avoid infinite loops
         while (currentRequestIndex < folderRequests.length) {